PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G25740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 279aa    MW: 31637.3 Da    PI: 8.4417
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G25740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18139226196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k++++s+v++  +l lp +f++ h  + +++ +++lede+g +++  +   +++ +  l++GW++F+  ++L++gD++vF+l + ++f  ++
  ONIVA02G25740.1 139 FVKTMVRSHVSSCFWLGLPTRFCKLHL-P-PKEYKMVLEDEEGGEFDSVY--IGNRTG--LSGGWRGFAMHHNLEDGDSLVFELAEPDRF--KI 224
                      89*********************8885.3.36679***************..555444..***********************9876777..55 PP

                      EE CS
               B3  95 kv 96 
                       +
  ONIVA02G25740.1 225 YI 226
                      55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-21131228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-24132228IPR015300DNA-binding pseudobarrel domain
CDDcd100176.62E-27137228No hitNo description
PROSITE profilePS5086312.464139230IPR003340B3 DNA binding domain
SMARTSM010192.5E-23139230IPR003340B3 DNA binding domain
PfamPF023623.6E-17139227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAAEAGSAAA GAAYEEERRK RVLENLKHLE DLGIKKMSKS LLEAARLQKS TRASPKPRKK  60
FEVGATEVRR SSRARNSVSY KENFDELDSF LCRRRGSRIR STEQGRDYTG RVASYEQQQR  120
AFKKAERLQN SLDPENPSFV KTMVRSHVSS CFWLGLPTRF CKLHLPPKEY KMVLEDEEGG  180
EFDSVYIGNR TGLSGGWRGF AMHHNLEDGD SLVFELAEPD RFKIYIIKAV DEDANESEPA  240
DEEAVGDKDT STEDAAEQDD SPNAEPLKGT KRRKLRGRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266272LKGTKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0687050.0AK068705.1 Oryza sativa Japonica Group cDNA clone:J013160D16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639491.10.0PREDICTED: B3 domain-containing protein Os05g0481400 isoform X2
SwissprotQ5KQI40.0Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLB8AZB10.0B8AZB1_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0G9E40.0A0A0E0G9E4_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PP270.0A0A0E0PP27_ORYRU; Uncharacterized protein
STRINGBGIOSGA017853-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-43B3 family protein